QubX.Modeling.Utils panel; hosts a registry of generic
model/data-based optimizers, and sub-panels which can use them.
Optimizer methods should be called from the gobject (gui) thread. To
call from a qubx.task.Robot thread, use robot.gui_call_recv with
wait=False.
Copyright 2003-2014 Research Foundation State University of New York
This file is part of QUB Express.
QUB Express is free software; you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or (at your
option) any later version.
QUB Express is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
Public License for more details.
You should have received a copy of the GNU General Public License,
named LICENSE.txt, in the QUB Express program directory. If not, see
<http://www.gnu.org/licenses/>.
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| task_exception_to_console(task,
typ,
val,
tb) |
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build_styled_model(optimizer,
add_state,
optimize=True,
delta_ll=1.0,
data_prep=None,
task=None,
should_quit=<__builtin__.function object>)
Builds up a model by, for all extant classes, repeatedly adding a
state until LL improves by less than delta_ll. |
source code
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| nauty_keep_model(nstate,
code,
max_conn,
max_exit) |
source code
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| nauty_setup_model(model,
state_order,
code,
balance_loops,
initial_k0,
random_rates,
random_from,
random_to,
decorate) |
source code
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| gen_perturbations(model,
all_at_once,
perturb_rates,
perturb_channelCount,
perturb_amp,
perturb_std,
perturb_cond,
perturb_condstd,
perturb_pct,
trials) |
source code
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