Trees | Indices | Help |
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object --+ | QubModel
Hidden Markov model, e.g. of one ion channel.
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Inherited from |
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IeqFv whether to use Cond instead of Amp |
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OnChangeBalanceLoops WeakEvent (QubModel, balance_loops)
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OnChangeChanged WeakEvent (QubModel, is_changed)
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OnChangeField WeakEvent (QubModel, 'Name' or 'In Folder' or
'Channel Count' or 'vRev' or 'k*format') for ObjectTable
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OnChangePath WeakEvent (QubModel, path or
"")
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OnChangeVariables WeakEvent (QubModel, [var_name])
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OnSetChannelCount WeakEvent (QubModel, channelCount)
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OnSetIeqFv WeakEvent (QubModel, IeqFv)
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OnSetK0Format WeakEvent (QubModel, k0format)
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OnSetK1Format WeakEvent (QubModel, k1format)
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OnSetVRev WeakEvent (QubModel, vRev)
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balance_loops True to maintain detailed balance |
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changed (bool) if different from on disk |
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channelCount number of identical mechanisms |
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classes qubx.table.SimpleTable of Amp, Std, Cond, CondStd, vRev |
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constraints_kin qubx.table.SimpleTable of Type, States |
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k0format format expr for all k0s |
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k1format format expr for all k1s and k2s |
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path folder/file name |
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rate_connecting dict: (a,b) -> index of rate connecting from state a to state b |
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rates qubx.table.SimpleTable of From, To, k0, k1, k2, Ligand, Voltage, Pressure |
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should_enforce_constraints generally True; temporarily False to set many rates at once |
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states qubx.table.SimpleTable of Class, Pr, x, y, Label |
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undoStack qubx.undo.UndoStack for all model edits |
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vRev reversal potential in millivolts |
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variables names of active variables e.g. |
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Inherited from |
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x.__init__(...) initializes x; see help(type(x)) for signature
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str(x)
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Returns the model as a QMF tree.
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IeqFvwhether to use Cond instead of Amp
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balance_loopsTrue to maintain detailed balance
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changed(bool) if different from on disk
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channelCountnumber of identical mechanisms
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k0formatformat expr for all k0s
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k1formatformat expr for all k1s and k2s
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pathfolder/file name
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vRevreversal potential in millivolts
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variablesnames of active variables e.g. Ligand, Voltage
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