Module trialset
source code
A trialset is a qubx.table.SimpleTable with one stored model per
row.
Copyright 2012 Research Foundation State University of New York This
file is part of QUB Express.
QUB Express is free software; you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or (at your
option) any later version.
QUB Express is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
Public License for more details.
You should have received a copy of the GNU General Public License,
named LICENSE.txt, in the QUB Express program directory. If not, see
<http://www.gnu.org/licenses/>.
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TrialSet
A table with one model per row (in qubx.tree QMF format); each row
represents one result such as an optimizer run.
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TrialSets
Collection of TrialSet by name.
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make_trial_row(model_path,
data_path,
LL,
nParam,
nData=0,
**kw)
Builds a dict representing one row in a TrialSet;
fills in AIC and BIC from LL and nParam; fills in Date from
time.localtime(). |
source code
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add_trial_nChannel(row,
model_tree,
prefix='')
Adds 'ChannelCount' from a model to a dict (representing one row in a
TrialSet). |
source code
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__package__ = 'qubx' |
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e = 2.71828182846
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pi = 3.14159265359
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rdbk = 'Expired.' |
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rdbreak = 'supporting' |
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rdname = 'qubfast.txt' |
make_trial_row(model_path,
data_path,
LL,
nParam,
nData=0,
**kw)
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Builds a dict representing one row in a TrialSet; fills
in AIC and BIC from LL and nParam; fills in Date from time.localtime().
Copies any keyword args into the output.
- Parameters:
model_path - copied into 'Model' fielddata_path - copied into 'Data' fieldLL - log likelihoodnParam - number of free parametersnData - number of data points
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add_trial_rates(row,
model_tree,
prefix='')
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Adds entries to a dict (representing one row in a TrialSet) for
all nonzero k0,k1,k2 rate constants.
- Parameters:
model_tree - model in qubx.tree QMF format, e.g. QubX.Models.file.as_tree()prefix - string to prepend to each rate constant, e.g. 'Initial ', or
'Final '
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Adds entries to a dict (representing one row in a TrialSet) for
relevant quantities from the Classes table.
- Parameters:
model_tree - model in qubx.tree QMF format, e.g. QubX.Models.file.as_tree()prefix - string to prepend to each entry, e.g. 'Initial ', or 'Final '
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